FastQCFastQC Report
Sun 21 May 2023
EGAF00007929963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540632
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50530.9346468577516684No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47360.8760117788070257No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19380.3584693469864899No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11840.21900294470175644No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9120.168691457405407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8270.1529691176252978No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7600.14057621450450583No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7440.1376167152517794No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7120.13169771674632652No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7120.13169771674632652No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6810.12596368694416904No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6720.12429896861451042No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6650.12300418769144261No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6310.11671525177939891No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6110.11301587771349088No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5810.10746681661462881No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5450.10080794329599431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)