FastQCFastQC Report
Sun 21 May 2023
EGAF00007929964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560758
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24210.43173704164719895No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20970.3739581067055664No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12970.23129406981264644No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9550.17030519404092317No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9120.16263700205792872No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8550.15247218942930818No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7540.13446085477157704No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7010.1250093623274211No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6530.11644952011384589No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6400.11413122951433594No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6090.10860299808473531No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5960.10628470748522535No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5950.10610637743910922No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG5660.10093480610174085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)