FastQCFastQC Report
Wed 31 May 2023
EGAF00007929967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555930
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21370.3844009137841095No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20630.37108988541722876No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19380.3486050402029033No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12880.23168384508841042No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12420.22340942204953862No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10840.19498857769863112No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9480.17052506610544493No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9250.16638785458600902No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9160.1647689457305776No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9050.16279027935171694No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6540.11764071016135125No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6310.11350349864191535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)