FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520901
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT74431.4288703611626776No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48350.9281994083328695No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC43890.8425785321970969No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA27400.5260116605650593No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23770.45632471429311905No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21240.4077550244672212No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG16770.3219421732728484No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16440.3156069963390356No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16120.30946379446382327No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13800.26492558086853357No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13170.2528311521767092No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11450.2198114420974427No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10860.2084849136400199No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10770.20675713811261642No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10170.1952386345965932No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10070.19331888401058933No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9870.18947938283858162No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9510.1825682807289677No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8920.17124175227154487No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8620.16548250051353328No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7840.15050844594270313No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.13515044125467218No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6950.1334226657272687No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6880.13207884031706602No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6690.12843131420365866No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6320.12132823703544435No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6270.12036836174244242No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6230.11960046150804088No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6170.11844861115643855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6080.11672083562903508No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6020.11556898527743276No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6020.11556898527743276No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5910.1134572596328285No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5810.11153750904682465No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5300.10174678105820492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)