FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences370552
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11610.31331634966212574No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9620.2596126859388156No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9330.251786523888685No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7960.21481465489324036No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7350.19835272782227598No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5960.1608411235130292No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5760.1554437703750081No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5410.14599840238347114No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5120.13817224033334052No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4520.12198018091927718No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4160.11226494527083919No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4000.10794706276042229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)