FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457877
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13800.3013909849151628No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12470.2723438827458029No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11620.2537799452691443No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9930.21687046958025843No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9530.20813449900300737No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7910.17275381816514043No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7260.1585578659771074No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6090.13300515203864793No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6000.13103955865876643No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5680.12405078219696555No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5620.1227403866103779No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4930.10767083736461976No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4720.10308445281156293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)