FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457877
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29230.6383810499326239No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14920.32585170253146584No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13130.28675823419826724No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11650.25443514306243814No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10520.22975602618170382No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10210.22298564898433423No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10080.2201464585467276No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9590.209444894589595No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6760.14763790275554353No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6130.13387874909637304No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6020.13147635718762898No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5250.11465961382642062No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5170.11291241971097042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)