FastQCFastQC Report
Wed 31 May 2023
EGAF00007929979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554507
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29570.5332664871678806No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG23760.4284887296283004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20650.3724028731828453No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19310.34823726301020547No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15670.282593366720348No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14220.25644401242905857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12650.22813057364469702No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12190.21983491642125347No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10900.1965710081207271No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10620.19152147763689187No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10220.18430786265998444No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9850.1776352688063451No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9690.17474982281558213No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8940.16122429473388072No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8560.15437136050581868No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8290.14950217039640618No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7970.14373127841488023No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7720.1392227690543131No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7540.13597664231470477No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7530.13579630194028208No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7480.13489460006816867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6810.12281179498184874No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6800.12263145460742605No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6790.12245111423300338No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6710.12100839123762189No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6420.11577852037936401No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6040.10892558615130196No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5910.10658116128380705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)