FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532432
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46730.8776707635904679No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28650.5380968837335096No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22150.41601556630705894No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19480.3658683174565015No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19160.35985816029089157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14960.2809748474922619No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13120.2464164437900051No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12380.23251795534453226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11540.21674129278480633No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10630.1996499083451032No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9950.18687832436818222No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9760.18330979355110136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9220.1731676533341347No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8700.16340114794001864No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8330.1564519037172822No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8190.15382245995732788No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7590.14255341527180937No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7310.1372945277519007No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7240.13597980587192357No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7060.132599092466268No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7010.13166000540914144No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6740.1265889353006581No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6520.12245695224930132No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6380.119827508489347No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6270.11776151696366859No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6160.1156955254379902No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5860.11006100309523094No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5570.10461429816389699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)