FastQCFastQC Report
Wed 31 May 2023
EGAF00007929982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551683
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13130.23799899580012435No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10960.19866481294511523No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10930.19812102239873264No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10590.19195806287306297No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8820.1598744206364887No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8340.15117377189436687No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8050.1459171299460016No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7140.1294221500390623No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6650.12054023778147958No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6010.1089393727919838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)