FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557824
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12940.23197280862781092No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12350.221395995869665No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11160.20006310234052319No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10760.19289238182652593No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8760.1570387792565397No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8560.1534534189995411No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8390.15040586278109225No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7000.12548760899495182No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6520.11688274437815512No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5900.10576812758145938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)