FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557824
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51650.9259192863698945No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29340.525972349701698No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18580.3330799678751721No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14740.2642410509407985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10920.19576067003212483No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9520.17066314823313447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8030.14395221431849473No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7230.12961077329050022No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7220.1294315052776503No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7110.12745955713630105No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5910.10594739559430931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)