FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550328
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25290.4595441264118853No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25200.457908738061665No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23020.41829599802299716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20180.3666904100827143No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19480.35397072291433473No Hit
CTGATTGGCTTCACCAACATCGACGGTCAGG14430.2622072654853106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14120.25657426116788534No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13650.2480338997834019No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12400.22532017269700977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12030.21859690947943772No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11930.21677981131252633No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11140.20242473579392653No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9090.16517422337224344No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9030.16408396447209664No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8880.16135831722172958No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.15990463868820048No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8600.15627044235437776No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8400.152636246020555No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7990.1451861435362184No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7560.1373726214184995No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6730.12229070663313515No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6600.11992847901615036No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6510.11829309066593015No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6120.1112064078149758No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA5750.10448314459740374No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5600.10175749734703668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)