FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534108
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT23050.43156065814404576No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20230.3787623476899803No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18290.3424401057464034No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18220.3411295093876145No Hit
CTGCAGGCGCTCATCGATGCTCAGCTGCAGTTCGTGTGCCGGTA14670.2746635511918938No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12690.2375923970432946No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11740.21980573217401725No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11330.21212938207253962No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11100.20782313689366194No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9900.1853557707429958No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8390.15708433500340754No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8390.15708433500340754No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8310.15558651059336315No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7960.14903352879941884No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7830.14659956413309666No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7360.13779984572408577No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7330.13723816157031912No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6860.1284384431613082No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6430.1203876369573195No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6430.1203876369573195No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6130.11477079541965295No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5470.10241374403678657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)