FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534108
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48650.910864469358257No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24030.4499090071670898No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22920.4291266934777236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20900.39130662712410225No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18880.35348656077048085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18480.34599743872025884No Hit
CTGATTGGCTTCACCAACATCGACGGTCAGG14750.27616137560193815No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13770.25781302657889416No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12960.24264755442719452No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12580.23553288847948353No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11960.22392474930163936No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11190.20950818935496193No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10410.1949044013570289No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9030.16906693028376282No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8510.15933107161847415No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8300.15539928254210758No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7730.14472728362054116No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7620.1426677750567301No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7490.14023381039040794No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6920.12956181146884152No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6660.12469388213619717No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6580.12319605772615277No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6410.12001318085480839No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5640.10559662090813093No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5510.10316265624180877No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA5360.10035423547297549No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5360.10035423547297549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)