FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531849
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17010.319827620245596No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16230.3051618034442107No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15430.29011994005817443No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15380.28917982359654715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14660.2756421465491145No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14480.27225772728725633No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14310.26906133131772364No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13950.26229249279400735No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13520.2542074912240128No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11570.21754294922054943No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11160.20983399423520588No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10900.2049453886347441No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10820.20344120229614043No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10510.1976124802340514No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10290.19347596780289142No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT10210.19197178146428778No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG10180.19140771158731143No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9160.1722293357701152No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7840.14741026118315537No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7820.14703421459850446No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7550.1419575857057172No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7540.14176956241339178No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7490.1408294459517645No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7480.14064142265943905No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6460.12146304684224282No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG6440.1210870002575919No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6380.1199588605036392No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6030.11337804527224832No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG5620.10566909028690474No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5470.10284874090202294No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5440.10228467102504658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)