FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531849
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35890.6748155961560518No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32330.6078793040881905No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23040.43320566551784434No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16890.31757134073769056No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16580.3117426186756015No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15580.29294028944305617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15020.2824109850728308No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13980.2628565626709837No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13460.2530793514700601No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12650.2378494647916984No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12600.2369093483300711No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11860.22299562469798756No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA11750.22092736848240757No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11390.21415852995869128No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11030.20738969143497496No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10700.20118492278823502No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9520.17899817429383152No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9220.1733574755240679No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8360.15718747238407893No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8180.15380305312222078No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8140.15305095995291898No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG7470.1404533993671136No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA7200.13537677047432636No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7070.13293246767409547No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6360.11958281391898828No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6220.11695048782643194No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6040.11356606856457378No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5750.10811339308713563No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG5590.10510502040992839No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5390.10134455456341931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)