FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557367
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA36320.6516352780125124No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34650.6216729731038974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23640.42413705870638196No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC21560.38681873882020285No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21510.38592166382293897No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT19900.3570358489110407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16940.3039290090730165No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC15740.28239920913868244No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15250.273607874165496No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13850.2484897742421062No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC13300.23862194927220304No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12850.23054827429682778No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12220.21924512933130233No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11740.21063320935756868No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10630.19071814441830964No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10320.18515627943527335No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9810.17600611446318135No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9660.1733148894713896No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9540.17116190947795618No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8660.15537338952611116No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7750.1390466245759078No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG7530.13509949458794654No Hit
GAACTGCACCAGGAAGAACCACTGTGCGTTT6990.12541108461749617No Hit
CCGAATGACAAACCATTCCAGAACGTTAACC6940.12451400962023226No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6910.1239757646218739No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6780.12164336962898771No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6740.12092570963117659No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6260.11231378965744294No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT6120.10980197966510397No Hit
TCTGGCCCGCAGCCGCAGGGCCCGCAGCAAC5970.1071107546733122No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5860.10513718967933158No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5820.10441952968152043No Hit
TGCGTTTGCCCGACCCTGAAGGGTGCTTCCA5780.1037018696837093No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG5620.10083122969246476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)