FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561868
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT36160.6435675283162593No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT24000.4271465895904376No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA21810.38816946329031016No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT19460.3463446930595798No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15870.28245068236667686No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15520.27622146126848296No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT15190.27034819566161444No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG14090.2507706436387194No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13040.23208298034413777No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT11780.20965778439063978No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11600.20645418496871148No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10890.19381776502666107No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG10870.1934618095353357No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10790.19203798757003424No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9890.17601999046039282No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9870.17566403496906746No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9840.1751301017320794No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9220.16409548150099312No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8760.15590850520050972No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT8330.14825546213701438No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8110.14433995173243538No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7960.14167028554749514No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7740.13775477514291612No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA7200.12814397687713128No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6940.12351655548990155No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6870.12227071127026276No Hit
GCAAACTTTCGGCAGGTGGGTTGCAGTCTGGTAAATGCGAGAGA6680.1188891341026718No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6330.11265991300447792No Hit
GCCGTTTTCGATAAAACCGGCAATAGCACCGAAGATGCCACGGG6310.11230395751315254No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT5900.10500686994098257No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5710.10162529277339162No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5620.10002349306242747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)