FastQCFastQC Report
Wed 31 May 2023
EGAF00007929995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561868
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA36380.6474830387208383No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35160.6257697537499911No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24170.4301722112667032No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT22010.3917290182035639No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC21230.3778467540418746No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT19700.3506161589554842No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17500.3114610549096941No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC14980.26661066300269814No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA14870.2646529078004086No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14480.25771177571956405No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC13510.24044793439028384No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13490.24009197889895847No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12390.2205144268760634No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12170.21659891647148438No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11120.19791125317690275No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10610.18883438814810596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10120.1801134786106345No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9980.17762179017135699No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9330.16605323670328262No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9060.16124783757039018No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT8490.1511031060676173No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG7480.13312735375568638No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7320.13027970982508347No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7130.1268981326574925No Hit
GAACTGCACCAGGAAGAACCACTGTGCGTTT6980.12422846647255226No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6910.1229826222529135No Hit
CCGAATGACAAACCATTCCAGAACGTTAACC6560.11675340115471962No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT6370.11337182398712867No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT6230.1108801355478511No Hit
TCTGGCCCGCAGCCGCAGGGCCCGCAGCAAC6020.10714260288893476No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG5900.10500686994098257No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5780.1028711369930304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)