FastQCFastQC Report
Wed 31 May 2023
EGAF00007929999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513780
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26220.510335162910195No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16480.3207598583051111No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13810.26879208999961074No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12990.25283195141889525No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12360.24056989372883336No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11320.2203277667484137No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11030.21468332749425825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10930.21273696913075638No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC10810.21040133909455408No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9990.1944412005138386No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9690.18860212542333293No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9560.18607185955078048No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC9490.18470940869632918No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9150.17809179026042274No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9020.1755615243878703No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7970.15512476157110047No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7580.1475339639534431No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7550.14695005644439255No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7250.1411109813538869No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6960.13546654209973139No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6640.12923819533652536No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6620.128848923663825No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6530.12709720113667328No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6420.1249562069368212No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6360.12378839191872007No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6010.11697613764646347No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5900.11483514344661139No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG5830.11347269259216006No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5720.111331698392308No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5210.10140527073844835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)