FastQCFastQC Report
Wed 31 May 2023
EGAF00007930001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517899
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26320.5082071987009049No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16460.3178225870295173No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13880.26800592393497574No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13100.25294507230174224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12670.24464229511931865No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11720.22629895018140603No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11720.22629895018140603No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC10710.20679707819478316No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10540.20351458489010404No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10220.1973357739636493No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9960.1923154900859048No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9530.1840127129034812No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9270.17899242902573667No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC9100.1757099357210576No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9000.17377905730654047No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8540.16489701659976175No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7720.14906381360072138No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7380.14249882699136318No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6950.13419604980893957No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6710.1295619416140985No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6660.12859650240683995No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG6630.1280172388824848No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6450.124541657736354No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6410.12376930637054714No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6350.12261077932183688No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6280.1212591644316749No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6210.11990754954151292No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5780.11160477235908932No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5750.1110255088347342No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5630.10870845473731365No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5590.1079361033715068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)