FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511130
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16320.31929254788409994No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14650.2866198423101755No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA13090.2560992311153718No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11700.22890458396102753No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10700.20934008960538414No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8680.16981981100698454No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8560.1674720716843073No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA8450.16531997730518655No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8370.1637548177567351No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8270.16179836832117073No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8180.16003756382916284No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7740.15142918631267976No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7320.14321209868330953No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7080.13851662003795512No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC6400.1252127638761176No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5400.10564826952047424No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5380.10525697963336138No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5280.10330053019779704No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5220.10212666053645843No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5170.10114843581867626No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5160.10095279087511982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)