FastQCFastQC Report
Wed 31 May 2023
EGAF00007930003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511130
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34890.6826052080683975No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19370.37896425566881226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17050.33357462876371957No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15850.31009723553694757No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA13630.2666640580674192No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10630.2079705750004891No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9570.18723221098350712No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8650.16923287617631522No Hit
AGCGTGCACATCAAGATCCCGAAAGTTTCCC8340.16316788292606577No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8200.1604288537162757No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8090.15827675933715493No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7770.15201612114334903No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7560.14790757732866394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7490.1465380627237689No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6980.13656017060239078No Hit
GTTCTGGTTAACGAAGGTAACGGTTATGTGG6250.12227808972277111No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5920.11582180658540879No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5690.11132197288361081No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5640.11034374816582865No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5590.10936552344804648No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5360.1048656897462485No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5310.10388746502846632No Hit
GAAGATGGCAACAAACCGGGTAAGGAAGACG5250.10271359536712774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)