FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496438
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46660.9398958178060502No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32650.6576853504365097No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18630.3752734480438645No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16250.3273319125449704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15620.31464150608938074No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA12410.24998086367280506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11020.22198139546126608No Hit
AGCGTGCACATCAAGATCCCGAAAGTTTCCC7910.15933510327573636No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7830.15772362309089957No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7800.15711931802158577No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7600.15309061755949385No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7430.14966622216671568No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7390.14886048207429728No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6940.13979590603459044No Hit
GTTCTGGTTAACGAAGGTAACGGTTATGTGG6410.12911984981004676No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6180.12448684427864103No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5710.11501939819272497No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5660.11401222307720199No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5270.10615625717612269No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5210.10494764703749511No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5190.10454477699128593No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5110.10293329680644914No Hit

[OK]Adapter Content

Adapter graph