FastQCFastQC Report
Wed 31 May 2023
EGAF00007930007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526918
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42290.802591674605916No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41070.7794381668494909No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20900.3966461574666267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19490.3698867755514141No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16680.31655779457145133No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12220.23191464326517597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11410.21654223237771342No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10680.20268808429395085No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT10660.20230851859302587No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10210.19376829032221332No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.1838995820981633No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9390.17820609658428824No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8490.1611256400426632No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8370.15884824583711318No Hit
TACGACGACTTCCATACCGATGAAGATAAAC8140.15448324027647564No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6980.13246842962282557No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6790.12886255546403805No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6410.12165080714646302No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6390.12127124144553801No Hit
GCATCTGCTGCTCCGGTTAAAGCCTCTCCGG6120.11614710448305049No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6040.1146288416793505No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5660.10741709336177546No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5470.10381121920298796No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5370.10191339069836293No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5320.10096447644605043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)