FastQCFastQC Report
Sun 21 May 2023
EGAF00007930008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508382
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20000.39340495926291646No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18350.36094905012372586No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17900.3520974385403102No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15860.31197013269549273No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14300.2812845458729853No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12160.2391902152318532No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9630.18942448788509428No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT9450.18588384325172802No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9320.18332671101651907No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9050.17801574406646972No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8590.16896743000342263No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8540.16798391760526535No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8150.16031252089963846No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8100.15932900850148116No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7410.14575653740691055No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG6980.13729833078275785No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6550.12884012415860516No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6400.12588958696413327No Hit
GCCGCCCTGTTCCTGGATATCCGGGGACAGGGTCGGATCGGACA5860.11526765306403453No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5810.11428414066587723No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5760.11330062826771993No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5470.10759625635840765No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5330.10484242164356725No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5300.10425231420467286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)