FastQCFastQC Report
Sun 21 May 2023
EGAF00007930009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508382
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46250.9097489682954942No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41830.8228064722983899No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39580.7785484143813117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18960.3729479013812448No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18450.36291607492004047No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16440.32337887651411734No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11280.2218803970242849No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10420.2049639837759795No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9850.19375194243698637No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT9760.19198162012030323No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8960.17624542174978658No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8770.17250807463678886No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8670.1705410498404743No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8460.16641029776821367No Hit
TACGACGACTTCCATACCGATGAAGATAAAC7380.14516642996801618No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6820.1341510911086545No Hit
GCATCTGCTGCTCCGGTTAAAGCCTCTCCGG6450.12687309936229055No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6160.12116872745297827No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5990.11782478529924348No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5770.1134973307473514No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5750.11310392578808848No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5740.11290722330845704No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5570.10956328115472225No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5520.10857976875656494No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5350.10523582660283015No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5250.10326880180651557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)