FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521016
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13750.26390744238180786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13560.2602607213598047No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12710.24394644310347474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12200.23415787614967679No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11990.23012728975693644No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9080.17427487831467747No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9040.17350714757320312No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8790.16870883043898843No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8160.15661707126076743No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7200.13819153346538304No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG6940.13320128364579975No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6820.1308980914213767No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6550.12571590891642484No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5870.11266448631136088No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5810.11151289019914937No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5630.10805810186251479No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5370.10306785204293151No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5320.10210818861608856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)