FastQCFastQC Report
Wed 31 May 2023
EGAF00007930021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521016
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18470.35449966987578113No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13850.26582676923549375No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12930.24816896218158366No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12830.2462496353278978No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12410.2381884625424171No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10380.19922612741259385No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG10120.19423587759301056No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9590.18406344526847543No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9140.175426474426889No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8920.17120395534878008No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7890.15143488875581557No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7540.14471724476791498No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7330.14068665837517466No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7200.13819153346538304No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7200.13819153346538304No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6410.12302885132126462No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5880.11285641899672946No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5880.11285641899672946No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5750.11036129408693782No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5670.10882583260398912No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5370.10306785204293151No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5250.10076465981850845No Hit

[OK]Adapter Content

Adapter graph