FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497991
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17470.35080955278308246No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15280.3068328544090154No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14470.29056750021586736No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14420.28956346600641375No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12380.2485988702607075No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11280.22651011765272866No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10520.21124879766903415No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9920.19920038715559116No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9710.19498344347588611No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6680.1341389703829989No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6540.13132767459652886No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6470.12992202670329384No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6310.12670911723304237No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6150.1234962077627909No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5750.11546393408716223No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5640.11325505882636433No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5490.11024295619800356No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5490.11024295619800356No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5480.11004214935611287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)