FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497991
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44790.8994138448285209No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35730.7174828460755315No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19230.38615155695584863No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15060.30241510388741966No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12260.24618918815801893No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11960.24016498290129742No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11010.2210883329216793No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10950.219883491870335No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10590.2126544455622692No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7020.14096640300728325No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6910.1387575277464854No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6880.13815510722081323No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6680.1341389703829989No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6410.12871718565194953No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6230.12510266249791663No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5820.11686958198039724No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5600.11245183145880146No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5450.1094397288304407No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5420.10883730830476857No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5200.10441955778317279No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5190.10421875094128207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)