FastQCFastQC Report
Wed 31 May 2023
EGAF00007930024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497190
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC44610.8972425028661074No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT42510.8550051288239909No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC37800.7602727327581005No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT36640.7369416118586456No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC36140.7268850942295702No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA29970.6027876666867796No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG27440.5519016874836582No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA24110.48492528007401603No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22670.4559625093022788No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21910.4406766025060842No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC21510.4326313884028239No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT19700.3962267945855709No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT19680.39582453388040784No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19300.3881815804823106No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA18050.3630402864096221No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16340.32864699611818415No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13680.27514632233150305No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG12920.2598604155353084No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12730.2560389388362598No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC12290.2471892033226734No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12210.24558016050202136No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11840.23813833745650556No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9830.19771113658762243No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9380.18866027072145458No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9370.18845914036887307No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9190.1848387940224059No Hit
CACGATTTCGGCGAAGGTCATGTTAGCCGCGATGCTACGCGGAA8980.18061505661819424No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA8960.18021279591303124No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8910.1792071441501237No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8900.1790060137975422No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8890.17880488344496068No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8470.17035740863653734No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG7920.15929523924455438No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7460.15004324302580502No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7250.14581950562159335No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7250.14581950562159335No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT7040.14159576821738168No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6850.13777429151833304No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6570.1321426416460508No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6140.12349403648504596No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5840.11746012590760072No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA5770.11605221343953015No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5630.11323638850338905No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5520.11102395462499245No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA5000.10056517629075402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)