FastQCFastQC Report
Wed 31 May 2023
EGAF00007930027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488266
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44870.9189663011555178No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10180.20849291165061667No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10090.20664965408199626No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9590.1964093342563275No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8760.17941040334571728No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8120.16630279396886125No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7970.16323069802116058No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5670.11612522682308414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5670.11612522682308414No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5650.11571561403005738No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5510.11284832447887012No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5250.10752335816952235No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5210.10670413258346886No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5010.10260800465320133No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4910.10055994068806756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)