FastQCFastQC Report
Sun 21 May 2023
EGAF00007930029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493003
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32480.6588195203680303No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26930.5462441405021876No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25430.515818362160068No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21550.4371170155151186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15520.3148053865797977No Hit
ATGTCCAACATGGACATCGATGGTATTAACA15150.30730036125540816No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14300.29005908686154036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13980.28356825414855485No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13800.2799171607475005No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12910.2618645322645095No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11710.23752390959081385No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11410.23143875392238994No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.19736188217921594No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9730.19736188217921594No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9410.19087104946623043No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9110.1847858937978065No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8310.16855881201534273No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7160.145232381953051No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7110.14421818934164699No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7080.14360967377480463No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7070.14340683525252382No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6680.1354961328835727No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6650.13488761731673032No Hit
AACGGTAACCGTTGCGAATGGTTTTTCAAGT6570.13326490913848393No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6200.12575988381409445No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6000.1217031133684785No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6000.1217031133684785No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5770.11703782735602015No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5540.11237254134356181No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5340.10831577089794586No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5320.10791009385338426No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG5180.10507035454145308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)