FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511930
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23660.4621725626550505No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21710.4240814173812826No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19980.39028773465122185No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19090.3729025452698611No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16100.31449612251675035No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15830.3092219639403825No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14990.2928134705916825No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14940.29183677455902174No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14240.27816303010177174No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13600.2656613208837146No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12690.24788545308928955No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11430.22327271306623953No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11180.21838923290293596No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10330.2017854003477038No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10100.1972925985974645No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8580.16760103920457875No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8550.16701502158498233No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8400.16408493348700018No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8050.15724806125837518No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7400.14455101283378588No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7020.13712812298556443No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7010.13693278377903229No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6770.13224464282226087No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6350.12404039614791085No Hit
GGTCAGGATGGTGCTACGGCGGCCTTTACGCTTGCGTTCCATAG6080.11876623757154298No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6040.11798488074541441No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5620.10978063407106439No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5480.10704588517961441No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5430.10606918914695368No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5190.10138104819018225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)