FastQCFastQC Report
Sun 21 May 2023
EGAF00007930033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511930
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45940.8973883148086652No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32440.6336803859902721No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22730.4440060164475612No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20580.40200808704315044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20510.40064071259742545No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17450.34086691539858965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16310.3185982458539253No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15340.29965034282030745No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14830.2896880432871682No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13600.2656613208837146No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13190.25765241341589673No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12610.24632273943703242No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12290.24007188482800382No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12080.23596976149082882No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.17541460746586449No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8960.17502392905280018No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8680.1695544312699002No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8380.16369425507393587No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8260.16135018459555017No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8000.15627136522571444No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7760.15158322426894302No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7700.15041118902975015No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7640.1492391537905573No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6910.13497939171371087No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6840.13361201726798586No Hit
ATGGGTTCCATTTTCAAACCGAAAATGCCAC6100.11915691598460727No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5930.11583614947356083No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5600.10938995565800012No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5510.10763190279921082No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5440.10626452835348582No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5370.10489715390776082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)