FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505916
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22010.4350524593015441No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG20440.40401963962396925No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17810.3520347251322354No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17750.3508487575012453No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17350.34294230662797776No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16650.32910601759975966No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14780.2921433597672341No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13530.26743570078827317No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11650.2302753816839159No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10780.21307885103455912No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10670.2109045770444105No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9600.18975482095841997No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9170.1812553862696574No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG8560.16919804868792448No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8340.16484950070762736No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8250.16307054926114214No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8140.1608962752709936No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7910.15635006601886478No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7910.15635006601886478No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7520.14864127641742897No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7110.1405371642723298No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7060.13954885791317137No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6870.1357932937483693No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6850.13539797120470592No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6820.13480498738921087No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6810.13460732611737916No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT6420.12689853651594335No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6310.1247242625257948No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG6290.12432893998213142No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6160.12175934344831947No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5810.11484119893421041No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5770.11405055384688367No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5660.11187627985673511No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5210.10298152262430917No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5130.10140023244965568No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG5130.10140023244965568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)