FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505916
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36890.7291724317870951No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30210.5971347022035278No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG21310.42121617027332603No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19500.3854394800717906No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18450.36468504652946343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17950.354801982937879No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16900.3340475493955518No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15410.3045960198926304No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15180.30004981064050157No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11670.2306707042275793No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11650.2302753816839159No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9720.19212675622040024No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9490.18758054696827142No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9340.1846156278907961No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9300.18382498280346934No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9180.1814530475414891No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9050.17888345100767716No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC8950.1769068382893603No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8500.16801208105693435No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8440.16682611342594422No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7610.15042022786391418No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7360.14547869606812197No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7210.14251377699064666No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7080.1399441804568347No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7030.1389558740976763No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6960.13757224519485448No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC6830.13500264866104253No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6830.13500264866104253No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6660.13164240703990387No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6640.13124708449624048No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6370.12591023015678493No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6310.1247242625257948No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6220.12294531107930962No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6040.11938740818633924No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5800.11464353766237874No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5740.11345757003138862No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5660.11187627985673511No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5570.11009732841024993No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5550.10970200586658656No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5250.10377216771163592No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5140.10159789372148736No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5110.10100490990599231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)