FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545439
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17760.32560927986447613No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14200.2603407530447951No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11930.21872290026932434No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10960.20093906009654608No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG7550.1384206116540988No Hit
ACCGGCCATGCCACGTTCGCCCGGCAGGCCAGGGTTACCATCCT6710.12302017274158981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)