FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545439
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28830.528565064104327No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18160.33294282220376614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11240.2060725397340491No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10030.18388857415769683No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA7690.14098735147285033No Hit
CCGCCGGGTCTGAAGGGTGCAAAAGGTGAAC7490.13732058030320532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)