FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499463
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12680.2538726592360195No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10710.2144302981402026No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7920.15857030450704057No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7220.14455525234101424No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7040.14095138178403605No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6600.13214192042253378No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6510.1303399851440447No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6300.12613546949423682No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6180.12373288912291801No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAGTGT5530.11071891211160786No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5220.10451224615236764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)