FastQCFastQC Report
Sun 21 May 2023
EGAF00007930043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499463
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45010.901167854275492No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15390.30813093262163566No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11850.23725481166773113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10740.21503094323303226No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC10030.20081567603606273No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8810.1763894422609883No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7870.1575692293523244No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7450.1491601980527086No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6900.1381483713508308No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6650.13314299557724996No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6190.12393310415386123No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5910.11832708328745072No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5310.10631418143085675No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5180.10371138602859471No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.10230988081199209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)