FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495329
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9710.19603132463473774No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6820.13768626508845636No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6200.1251693318985967No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5740.11588257501579757No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5160.10417318590270304No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5080.10255809774917277No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4970.10033735153806864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)