FastQCFastQC Report
Sun 21 May 2023
EGAF00007930049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500900
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19040.38011579157516473No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13390.2673188261129966No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12920.2579357157117189No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11690.23337991615092835No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11310.2257935715711719No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10980.2192054302255939No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10910.21780794569774406No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9680.1932521461369535No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9330.18626472349770412No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8770.17508484727490517No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8520.17009383110401277No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7520.1501297664204432No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6880.13735276502295868No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6750.13475743661409464No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6530.1303653423837093No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5690.11359552804951088No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5520.11020163705330406No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5480.10940307446596129No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5460.10900379317228988No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC5440.10860451187861847No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5210.10401277700139748No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5090.10161708923936913No Hit

[OK]Adapter Content

Adapter graph