FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487912
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16120.3303874469166571No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14490.2969797832396006No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10730.21991670629129845No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10000.2049549918837823No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9720.1992162521110364No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9530.19532210726524454No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8990.18425453770352032No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8910.18261489776845005No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8530.17482660807686634No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7690.1576103887586286No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7230.14818245913197464No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7030.14408335929429897No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6310.12932659987866665No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6290.12891668989489907No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5850.11989867025201267No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5810.11907885028447752No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5720.11723425535752349No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA5590.11456984046303433No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5490.11252029054419649No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5430.1112905605928938No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4910.10063290101493712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)