FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487912
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34000.6968469724048598No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20000.4099099837675646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16170.331412221876076No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14380.29472527832887896No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10760.22053157126694978No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10310.21130859663217957No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9970.20434012690813097No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9600.19675679220843104No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8990.18425453770352032No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8870.18179507780091492No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8750.17933561789830954No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8440.17298201314991227No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7320.15002705405892866No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7120.14592795422125301No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6680.1369099345783666No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6060.12420272508157208No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5970.12235813015461805No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5910.12112840020331536No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5830.11948876026824509No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5800.11887389529259375No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5490.11252029054419649No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4890.10022299103116955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)