FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490662
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16630.3389298539524153No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14420.29388866470197406No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11050.22520594625220622No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10060.2050291239182981No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9550.19463500332204245No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9260.18872462102221083No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8930.18199901357757478No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8900.1813875947189715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8580.17486579356053658No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7680.15652322780243835No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7670.15631942151623723No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7540.15366993979562305No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7220.14714813863718812No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6410.13063982945489971No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5960.12146854657585059No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5920.12065332143104622No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5900.12024570885864404No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5820.11861525856903529No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA5710.1163733894208233No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5240.10679449396937199No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5020.10231075567294796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)