FastQCFastQC Report
Sun 21 May 2023
EGAF00007930055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490662
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34280.698647949097342No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21020.4284008135946945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16150.32914715221476293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14530.29613053385018606No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10420.21236615022153746No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10390.21175473136293416No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10100.2058443490631025No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9540.19443119703584136No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9430.19218932788762935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8960.18261043243617806No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8870.18077617586036823No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8710.17751527528115077No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7520.15326232722322086No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7140.1455176883475794No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6350.12941699173769317No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6170.12574847858607352No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6060.12350660943786151No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5870.11963429000004075No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5870.11963429000004075No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5750.11718861456562765No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5240.10679449396937199No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.10679449396937199No Hit

[OK]Adapter Content

Adapter graph