FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501705
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26230.5228171933706063No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15890.31671998485165587No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15430.3075512502366929No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14230.2836328121107025No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8870.17679712181461218No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8520.16982091069453165No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8040.16025353544413548No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7980.15905761353783598No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7770.15487188686578768No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7430.14809499606342372No Hit
TTTTGCTTTGTCACGTGGGTCATACAGATCACGGAAGTCCAGGT6940.13832830049531097No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6920.13792965985987782No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6570.13095344873979728No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6410.1277643236563319No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6320.12597044079688263No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6110.12178471412483431No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5770.11500782332247038No Hit
TTTGGCTTTGTCACGCGGGTCGTACAGATCACGAAAATCCAGGT5130.10225132298860885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)